J3_8BR8_020
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_020 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1265
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BR8|1|St|U|912
8BR8|1|St|G|913
8BR8|1|St|G|914
8BR8|1|St|A|915
*
8BR8|1|St|U|1174
8BR8|1|St|A|1175
8BR8|1|St|C|1176
*
8BR8|1|St|G|1262
8BR8|1|St|G|1263
8BR8|1|St|A|1264
8BR8|1|St|A|1265
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SF
- Ribosomal protein S5
- Chain ST
- Ribosomal protein S16
- Chain SV
- Ribosomal protein S18
- Chain SW
- Ribosomal protein S19e
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