J3_8BR8_022

3D structure

PDB id

8BR8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state (A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

CCGGAC*GGGUG*UCAGACG

Length

18 nucleotides

Bulged bases

8BR8|1|St|G|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BR8_022 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.2246

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8BR8|1|St|C|958
8BR8|1|St|C|959
8BR8|1|St|G|960
8BR8|1|St|G|961
8BR8|1|St|A|962
8BR8|1|St|C|963
*
8BR8|1|St|G|1005
8BR8|1|St|G|1006
8BR8|1|St|G|1007
8BR8|1|St|U|1008
8BR8|1|St|G|1009
*
8BR8|1|St|U|1148
8BR8|1|St|C|1149
8BR8|1|St|A|1150
8BR8|1|St|G|1151
8BR8|1|St|A|1152
8BR8|1|St|C|1153
8BR8|1|St|G|1154

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SL

Ribosomal protein S10B

Chain Sh

Ribosomal protein S29A