J3_8BR8_026
3D structure
- PDB id
- 8BR8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state (A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CACUG*CGUGGCCG*CCAG
- Length
- 17 nucleotides
- Bulged bases
- 8BR8|1|St|U|1179, 8BR8|1|St|C|1229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BR8_026 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1668
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8BR8|1|St|C|1176
8BR8|1|St|A|1177
8BR8|1|St|C|1178
8BR8|1|St|U|1179
8BR8|1|St|G|1180
*
8BR8|1|St|C|1223
8BR8|1|St|G|1224
8BR8|1|St|U|1225
8BR8|1|St|G|1226
8BR8|1|St|G|1227
8BR8|1|St|C|1228
8BR8|1|St|C|1229
8BR8|1|St|G|1230
*
8BR8|1|St|C|1259
8BR8|1|St|C|1260
8BR8|1|St|A|1261
8BR8|1|St|G|1262
Current chains
- Chain St
- Small Subunit rRNA
Nearby chains
- Chain SF
- Ribosomal protein S5
- Chain SV
- Ribosomal protein S18
- Chain SW
- Ribosomal protein S19e
- Chain Sc
- 40S ribosomal protein S25
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