J3_8C00_003

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C00_003 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1015

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8C00|1|2|A|760
8C00|1|2|G|761
8C00|1|2|A|762
8C00|1|2|G|763
*
8C00|1|2|C|773
8C00|1|2|A|774
8C00|1|2|G|775
*
8C00|1|2|U|785
8C00|1|2|C|786
8C00|1|2|G|787
8C00|1|2|A|788
8C00|1|2|A|789
8C00|1|2|U|790

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A