J3_8C00_007

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C00_007 not in the Motif Atlas

Homologous match to J3_8C3A_039

Geometric discrepancy: 0.1211

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8C00|1|2|U|1168
8C00|1|2|G|1169
8C00|1|2|G|1170
8C00|1|2|A|1171
*
8C00|1|2|U|1468
8C00|1|2|A|1469
8C00|1|2|C|1470
*
8C00|1|2|G|1574
8C00|1|2|G|1575
8C00|1|2|A|1576
8C00|1|2|A|1577

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

rpS5

Chain I

40S ribosomal protein S19-A

Chain r

Serine/threonine-protein kinase RIO2