J3_8C3A_075
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8C3A|1|AT|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8C3A_075 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0892
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8C3A|1|AT|C|9
8C3A|1|AT|C|10
8C3A|1|AT|A|11
8C3A|1|AT|U|12
8C3A|1|AT|A|13
8C3A|1|AT|U|14
*
8C3A|1|AT|A|66
8C3A|1|AT|G|67
*
8C3A|1|AT|U|111
8C3A|1|AT|G|112
Current chains
- Chain AT
- 5S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- Uncharacterized protein CaJ7.0206
- Chain BE
- 60S ribosomal protein L10
- Chain BO
- 60S ribosomal protein L21-A
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