J3_8C3A_076
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8C3A|1|AU|U|60, 8C3A|1|AU|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8C3A_076 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0614
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8C3A|1|AU|A|44
8C3A|1|AU|C|45
*
8C3A|1|AU|G|58
8C3A|1|AU|A|59
8C3A|1|AU|U|60
8C3A|1|AU|A|61
8C3A|1|AU|C|62
8C3A|1|AU|G|63
8C3A|1|AU|U|64
*
8C3A|1|AU|A|96
8C3A|1|AU|A|97
8C3A|1|AU|U|98
8C3A|1|AU|C|99
8C3A|1|AU|U|100
Current chains
- Chain AU
- 5.8S
Nearby chains
- Chain BS
- 60S ribosomal protein L25
- Chain CC
- Ribosomal protein L29
- Chain CE
- 60S ribosomal protein L37-B
- Chain CG
- 60S ribosomal protein L39
Coloring options: