J3_8C93_010

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C93_010 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.5579

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8C93|1|A|G|1424
8C93|1|A|G|1425
8C93|1|A|G|1426
8C93|1|A|A|1427
8C93|1|A|C|1428
8C93|1|A|G|1429
*
8C93|1|A|C|1564
8C93|1|A|C|1565
*
8C93|1|A|G|1568
8C93|1|A|A|1569
8C93|1|A|A|1570
8C93|1|A|A|1571
8C93|1|A|A|1572
8C93|1|A|G|1573
8C93|1|A|C|1574

Current chains

Chain A

23S rRNA

Nearby chains