J3_8C97_008

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C97|1|A|U|448, 8C97|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C97_008 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.1642

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

8C97|1|A|C|32
8C97|1|A|C|33
8C97|1|A|U|34
8C97|1|A|G|35
*
8C97|1|A|C|445
8C97|1|A|G|446
8C97|1|A|A|447
8C97|1|A|U|448
8C97|1|A|A|449
8C97|1|A|G|450
8C97|1|A|U|451
8C97|1|A|G|452
8C97|1|A|A|453
8C97|1|A|A|454
8C97|1|A|C|455
8C97|1|A|C|456
8C97|1|A|A|457
8C97|1|A|G|458
8C97|1|A|U|459
8C97|1|A|A|460
8C97|1|A|C|461
*
8C97|1|A|G|468
8C97|1|A|G|469
8C97|1|A|A|470
8C97|1|A|A|471
8C97|1|A|A|472
8C97|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23