3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
8CAM|1|a|A|504, 8CAM|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CAM_011 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0883
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8CAM|1|a|G|30
8CAM|1|a|C|31
*
8CAM|1|a|G|474
8CAM|1|a|C|475
8CAM|1|a|G|476
8CAM|1|a|A|477
8CAM|1|a|A|478
8CAM|1|a|A|479
8CAM|1|a|A|480
8CAM|1|a|G|481
8CAM|1|a|A|482
8CAM|1|a|A|483
8CAM|1|a|C|484
*
8CAM|1|a|G|496
8CAM|1|a|A|497
8CAM|1|a|G|498
8CAM|1|a|U|499
8CAM|1|a|G|500
8CAM|1|a|A|501
8CAM|1|a|A|502
8CAM|1|a|A|503
8CAM|1|a|A|504
8CAM|1|a|A|505
8CAM|1|a|G|506
8CAM|1|a|A|507
8CAM|1|a|A|508
8CAM|1|a|C|509
8CAM|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
Large ribosomal subunit protein bL20
Chain r
Large ribosomal subunit protein uL22
Chain t
Large ribosomal subunit protein uL24

Coloring options:


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