J3_8CKU_016
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_016 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1426
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|c|U|1168
8CKU|1|c|G|1169
8CKU|1|c|G|1170
8CKU|1|c|A|1171
*
8CKU|1|c|U|1468
8CKU|1|c|A|1469
8CKU|1|c|C|1470
*
8CKU|1|c|G|1574
8CKU|1|c|G7M|1575
8CKU|1|c|A|1576
8CKU|1|c|A|1577
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain u
- 40S ribosomal protein S18-A
- Chain v
- 40S ribosomal protein S19-A
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