J3_8CKU_028
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8CKU|1|AA|A|1065, 8CKU|1|AA|U|1094, 8CKU|1|AA|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_028 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.3927
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|AA|U|986
8CKU|1|AA|U|987
*
8CKU|1|AA|A|1062
8CKU|1|AA|G|1063
8CKU|1|AA|A|1064
8CKU|1|AA|A|1065
8CKU|1|AA|G|1066
*
8CKU|1|AA|C|1092
8CKU|1|AA|A|1093
8CKU|1|AA|U|1094
8CKU|1|AA|U|1095
8CKU|1|AA|U|1096
8CKU|1|AA|G|1097
8CKU|1|AA|A|1098
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L21-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain N
- 60S ribosomal protein L29
Coloring options: