J3_8CMJ_010

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8CMJ|1|AA|A|2887, 8CMJ|1|AA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CMJ_010 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.1455

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8CMJ|1|AA|U|2886
8CMJ|1|AA|A|2887
8CMJ|1|AA|U|2888
8CMJ|1|AA|C|2889
*
8CMJ|1|AA|G|2914
8CMJ|1|AA|U|2915
8CMJ|1|AA|U|2916
*
8CMJ|1|AA|A|2930
8CMJ|1|AA|C|2931
8CMJ|1|AA|U|2932
8CMJ|1|AA|A|2933
8CMJ|1|AA|A|2934
8CMJ|1|AA|U|2935
8CMJ|1|AA|A|2936

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A