J3_8CMJ_015

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CMJ_015 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.3552

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CMJ|1|c|C|1161
8CMJ|1|c|C|1162
8CMJ|1|c|A|1163
8CMJ|1|c|G|1164
*
8CMJ|1|c|C|1581
8CMJ|1|c|U|1582
8CMJ|1|c|A|1583
8CMJ|1|c|G|1584
8CMJ|1|c|U|1585
8CMJ|1|c|A|1586
8CMJ|1|c|A|1587
*
8CMJ|1|c|U|1609
8CMJ|1|c|G|1610
8CMJ|1|c|A|1611
8CMJ|1|c|U|1612
8CMJ|1|c|U|1613
8CMJ|1|c|A|1614
8CMJ|1|c|C|1615
8CMJ|1|c|G|1616

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain i

40S ribosomal protein S5

Chain s

40S ribosomal protein S16-A