J3_8CVM_013

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CC*GUUGAU*AAUAG

Length

13 nucleotides

Bulged bases

8CVM|1|a|U|3013, 8CVM|1|a|A|3015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_013 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.1392

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|C|2994
8CVM|1|a|C|2995
*
8CVM|1|a|G|3011
8CVM|1|a|U|3012
8CVM|1|a|U|3013
8CVM|1|a|G|3014
8CVM|1|a|A|3015
8CVM|1|a|U|3016
*
8CVM|1|a|A|3062
8CVM|1|a|A|3063
8CVM|1|a|U|3064
8CVM|1|a|A|3065
8CVM|1|a|G|3066

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain z

50S ribosomal protein L32