J3_8CVM_015
3D structure
- PDB id
- 8CVM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUUCC
- Length
- 28 nucleotides
- Bulged bases
- 8CVM|1|a|G|592, 8CVM|1|a|U|596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVM_015 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1287
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CVM|1|a|G|29
8CVM|1|a|C|30
*
8CVM|1|a|G|563
8CVM|1|a|U|564
8CVM|1|a|G|565
8CVM|1|a|A|566
8CVM|1|a|A|567
8CVM|1|a|A|568
8CVM|1|a|A|569
8CVM|1|a|G|570
8CVM|1|a|U|571
8CVM|1|a|A|572
8CVM|1|a|C|573
*
8CVM|1|a|G|584
8CVM|1|a|A|585
8CVM|1|a|G|586
8CVM|1|a|U|587
8CVM|1|a|G|588
8CVM|1|a|A|589
8CVM|1|a|A|590
8CVM|1|a|A|591
8CVM|1|a|G|592
8CVM|1|a|A|593
8CVM|1|a|G|594
8CVM|1|a|U|595
8CVM|1|a|U|596
8CVM|1|a|C|597
8CVM|1|a|C|598
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain p
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L24
Coloring options: