J3_8CVM_020

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGACG*UC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_020 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0726

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|G|1604
8CVM|1|a|G|1605
8CVM|1|a|G|1606
8CVM|1|a|A|1607
8CVM|1|a|C|1608
8CVM|1|a|G|1609
*
8CVM|1|a|U|1747
8CVM|1|a|C|1748
*
8CVM|1|a|G|1751
8CVM|1|a|A|1752
8CVM|1|a|A|1753
8CVM|1|a|A|1754
8CVM|1|a|A|1755
8CVM|1|a|G|1756
8CVM|1|a|C|1757

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2