J3_8CWO_004
3D structure
- PDB id
- 8CWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CUAG*CGUAG*CUUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8CWO|1|A|U|855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CWO_004 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1413
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8CWO|1|A|C|808
8CWO|1|A|U|809
8CWO|1|A|A|810
8CWO|1|A|G|811
*
8CWO|1|A|C|841
8CWO|1|A|G|842
8CWO|1|A|U|843
8CWO|1|A|A|844
8CWO|1|A|G|845
*
8CWO|1|A|C|852
8CWO|1|A|U|853
8CWO|1|A|U|854
8CWO|1|A|U|855
8CWO|1|A|A|856
8CWO|1|A|A|857
8CWO|1|A|G|858
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
- Chain H
- 30S ribosomal protein S8
Coloring options: