J3_8CWO_005
3D structure
- PDB id
- 8CWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8CWO|1|A|U|52, 8CWO|1|A|A|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CWO_005 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0666
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CWO|1|A|G|50
8CWO|1|A|C|51
8CWO|1|A|U|52
8CWO|1|A|U|53
8CWO|1|A|A|54
8CWO|1|A|A|55
8CWO|1|A|C|56
*
8CWO|1|A|G|361
8CWO|1|A|G|362
8CWO|1|A|G|363
8CWO|1|A|G|364
8CWO|1|A|A|365
8CWO|1|A|A|366
8CWO|1|A|U|367
8CWO|1|A|A|368
8CWO|1|A|U|369
*
8CWO|1|A|A|395
8CWO|1|A|G|396
8CWO|1|A|C|397
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: