J3_8ETI_006
3D structure
- PDB id
- 8ETI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Fkbp39 associated 60S nascent ribosome State 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8ETI|1|2|C|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ETI_006 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1497
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8ETI|1|2|A|52
8ETI|1|2|C|53
*
8ETI|1|2|G|66
8ETI|1|2|A|67
8ETI|1|2|U|68
8ETI|1|2|A|69
8ETI|1|2|C|70
8ETI|1|2|G|71
8ETI|1|2|U|72
*
8ETI|1|2|A|104
8ETI|1|2|A|105
8ETI|1|2|U|106
8ETI|1|2|C|107
8ETI|1|2|U|108
Current chains
- Chain 2
- RNA (152-MER)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25-A
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37-B
- Chain v
- Nucleolar protein 16
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