J3_8EVP_013
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_013 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.0996
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|A|759
8EVP|1|B5|G|760
8EVP|1|B5|A|761
8EVP|1|B5|G|762
*
8EVP|1|B5|C|772
8EVP|1|B5|A|773
8EVP|1|B5|G|774
*
8EVP|1|B5|U|784
8EVP|1|B5|C|785
8EVP|1|B5|G|786
8EVP|1|B5|A|787
8EVP|1|B5|A|788
8EVP|1|B5|U|789
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BY
- 40S ribosomal protein S24-A
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