J3_8EVP_016

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVP_016 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.129

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EVP|1|B5|C|1160
8EVP|1|B5|C|1161
8EVP|1|B5|A|1162
8EVP|1|B5|G|1163
*
8EVP|1|B5|C|2189
8EVP|1|B5|U|2190
8EVP|1|B5|A|2191
8EVP|1|B5|G|2192
8EVP|1|B5|U|2193
8EVP|1|B5|A|2194
8EVP|1|B5|A|2195
*
8EVP|1|B5|U|2217
8EVP|1|B5|G|2218
8EVP|1|B5|A|2219
8EVP|1|B5|U|2220
8EVP|1|B5|U|2221
8EVP|1|B5|A|2222
8EVP|1|B5|C|2223
8EVP|1|B5|G|2224

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1