J3_8EVP_019
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8EVP|1|B5|G|2053, 8EVP|1|B5|C|2055
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_019 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1314
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8EVP|1|B5|C|1823
8EVP|1|B5|C|1824
8EVP|1|B5|A|1825
8EVP|1|B5|G|1826
8EVP|1|B5|A|1827
8EVP|1|B5|C|1828
*
8EVP|1|B5|G|1871
8EVP|1|B5|G|1872
8EVP|1|B5|G|1873
8EVP|1|B5|U|1874
8EVP|1|B5|G|1875
*
8EVP|1|B5|U|2050
8EVP|1|B5|U|2051
8EVP|1|B5|A|2052
8EVP|1|B5|G|2053
8EVP|1|B5|A|2054
8EVP|1|B5|C|2055
8EVP|1|B5|G|2056
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain Bd
- RPS29A isoform 1
- Chain Bf
- Ubiquitin-40S ribosomal protein S31
Coloring options: