J3_8EVP_022
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CACUG*CGUGCUGG*C(OMG)AG
- Length
- 17 nucleotides
- Bulged bases
- 8EVP|1|B5|U|2081, 8EVP|1|B5|G|2147
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_022 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1027
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8EVP|1|B5|C|2078
8EVP|1|B5|A|2079
8EVP|1|B5|C|2080
8EVP|1|B5|U|2081
8EVP|1|B5|G|2082
*
8EVP|1|B5|C|2141
8EVP|1|B5|G|2142
8EVP|1|B5|U|2143
8EVP|1|B5|G|2144
8EVP|1|B5|C|2145
8EVP|1|B5|U|2146
8EVP|1|B5|G|2147
8EVP|1|B5|G|2148
*
8EVP|1|B5|C|2179
8EVP|1|B5|OMG|2180
8EVP|1|B5|A|2181
8EVP|1|B5|G|2182
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BZ
- RPS25A isoform 1
Coloring options: