J3_8FL9_008

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FL9_008 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.1286

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8FL9|1|L3|C|3937
8FL9|1|L3|G|3938
8FL9|1|L3|G|3939
*
8FL9|1|L3|C|4074
8FL9|1|L3|U|4075
8FL9|1|L3|G|4076
8FL9|1|L3|A|4077
8FL9|1|L3|C|4078
*
8FL9|1|L3|G|4168
8FL9|1|L3|G|4169
8FL9|1|L3|A|4170
8FL9|1|L3|C|4171
8FL9|1|L3|A|4172
8FL9|1|L3|G|4173

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain SE

60S ribosomal protein L7a

Chain SF

60S ribosomal protein L8