J3_8FRU_001
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UGAUCUA*UGG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8FRU|1|1|U|532, 8FRU|1|1|G|639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FRU_001 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1082
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FRU|1|1|U|529
8FRU|1|1|G|530
8FRU|1|1|A|531
8FRU|1|1|U|532
8FRU|1|1|C|533
8FRU|1|1|U|534
8FRU|1|1|A|535
*
8FRU|1|1|U|620
8FRU|1|1|G|621
8FRU|1|1|G|622
*
8FRU|1|1|C|638
8FRU|1|1|G|639
8FRU|1|1|A|640
8FRU|1|1|A|641
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain N
- 60S ribosomal protein eL15
- Chain j
- 60S ribosomal protein eL37
- Chain l
- 60S ribosomal protein eL39
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