J3_8G2U_030

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8G2U|1|v|C|48, 8G2U|1|v|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2U_030 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0832

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G2U|1|v|G|46
8G2U|1|v|C|47
8G2U|1|v|C|48
8G2U|1|v|U|49
8G2U|1|v|A|50
8G2U|1|v|A|51
8G2U|1|v|C|52
*
8G2U|1|v|G|359
8G2U|1|v|G|360
8G2U|1|v|G|361
8G2U|1|v|G|362
8G2U|1|v|A|363
8G2U|1|v|A|364
8G2U|1|v|U|365
8G2U|1|v|A|366
8G2U|1|v|U|367
*
8G2U|1|v|A|393
8G2U|1|v|G|394
8G2U|1|v|C|395

Current chains

Chain v

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S12

Chain o

30S ribosomal protein S16