J3_8GHU_002

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8GHU|1|a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8GHU_002 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2377

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8GHU|1|a|C|826
8GHU|1|a|U|827
8GHU|1|a|U|828
8GHU|1|a|G|829
*
8GHU|1|a|C|857
8GHU|1|a|G|858
8GHU|1|a|G|859
8GHU|1|a|A|860
8GHU|1|a|G|861
*
8GHU|1|a|C|868
8GHU|1|a|G|869
8GHU|1|a|U|870
8GHU|1|a|U|871
8GHU|1|a|A|872
8GHU|1|a|A|873
8GHU|1|a|G|874

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8