J3_8HFR_004
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8HFR|1|1e|A|817, 8HFR|1|1e|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0776
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8HFR|1|1e|U|814
8HFR|1|1e|G|815
8HFR|1|1e|A|816
8HFR|1|1e|A|817
8HFR|1|1e|C|818
8HFR|1|1e|U|819
8HFR|1|1e|A|820
*
8HFR|1|1e|U|905
8HFR|1|1e|A|906
8HFR|1|1e|G|907
*
8HFR|1|1e|C|923
8HFR|1|1e|G|924
8HFR|1|1e|A|925
8HFR|1|1e|A|926
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain B4
- 60S ribosomal protein L2-A
- Chain No
- 60S ribosomal protein L15-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain rA
- Nucleolar GTP-binding protein 1
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