J3_8HFR_006
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8HFR|1|1e|A|1065, 8HFR|1|1e|U|1094, 8HFR|1|1e|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.219
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8HFR|1|1e|U|986
8HFR|1|1e|U|987
*
8HFR|1|1e|A|1062
8HFR|1|1e|G|1063
8HFR|1|1e|A|1064
8HFR|1|1e|A|1065
8HFR|1|1e|G|1066
*
8HFR|1|1e|C|1092
8HFR|1|1e|A|1093
8HFR|1|1e|U|1094
8HFR|1|1e|U|1095
8HFR|1|1e|U|1096
8HFR|1|1e|G|1097
8HFR|1|1e|A|1098
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain Gu
- 60S ribosomal protein L7-A
- Chain Tl
- 60S ribosomal protein L21-A
- Chain b3
- 60S ribosomal protein L29
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