J3_8IP8_006
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAA*UCAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|RB|U|1836, 8IP8|1|RB|A|1837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_006 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0742
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8IP8|1|RB|G|1491
8IP8|1|RB|A|1492
8IP8|1|RB|A|1493
8IP8|1|RB|A|1494
*
8IP8|1|RB|U|1833
8IP8|1|RB|C|1834
8IP8|1|RB|A|1835
8IP8|1|RB|U|1836
8IP8|1|RB|A|1837
8IP8|1|RB|A|1838
8IP8|1|RB|C|1839
*
8IP8|1|RB|G|1848
8IP8|1|RB|U|1849
8IP8|1|RB|C|1850
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain PB
- 60S ribosomal protein eL34
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
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