J3_8IP8_011
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUC*GUU*ACCAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8IP8|1|RB|A|2884, 8IP8|1|RB|U|2885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_011 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0978
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|RB|U|2883
8IP8|1|RB|A|2884
8IP8|1|RB|U|2885
8IP8|1|RB|C|2886
*
8IP8|1|RB|G|2911
8IP8|1|RB|U|2912
8IP8|1|RB|U|2913
*
8IP8|1|RB|A|2927
8IP8|1|RB|C|2928
8IP8|1|RB|C|2929
8IP8|1|RB|A|2930
8IP8|1|RB|A|2931
8IP8|1|RB|U|2932
8IP8|1|RB|A|2933
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain DB
- 60S ribosomal protein uL3
- Chain FB
- 60S ribosomal protein uL13
- Chain GA
- 60S ribosomal protein uL14
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