J3_8IP8_012
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUC*GAACAACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8IP8|1|aa|C|939
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_012 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0936
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|aa|A|886
8IP8|1|aa|U|887
8IP8|1|aa|U|888
8IP8|1|aa|C|889
*
8IP8|1|aa|G|933
8IP8|1|aa|A|934
8IP8|1|aa|A|935
8IP8|1|aa|C|936
8IP8|1|aa|A|937
8IP8|1|aa|A|938
8IP8|1|aa|C|939
8IP8|1|aa|U|940
8IP8|1|aa|G|941
*
8IP8|1|aa|C|948
8IP8|1|aa|A|949
8IP8|1|aa|U|950
8IP8|1|aa|U|951
8IP8|1|aa|U|952
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain GB
- 60S ribosomal protein eL43
- Chain bb
- 40S ribosomal protein eS1
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
- Chain pa
- 40S ribosomal protein uS15
Coloring options: