J3_8IP8_015
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_015 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0755
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8IP8|1|aa|U|1173
8IP8|1|aa|G|1174
8IP8|1|aa|G|1175
8IP8|1|aa|A|1176
*
8IP8|1|aa|U|1474
8IP8|1|aa|A|1475
8IP8|1|aa|C|1476
*
8IP8|1|aa|G|1582
8IP8|1|aa|G|1583
8IP8|1|aa|A|1584
8IP8|1|aa|A|1585
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain cl
- Transfer RNA; tRNA
- Chain ka
- 40S ribosomal protein uS7
- Chain la
- 40S ribosomal protein uS9
- Chain ra
- 40S ribosomal protein eS19
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