J3_8IP8_017

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8IP8|1|aa|A|1221, 8IP8|1|aa|G|1451, 8IP8|1|aa|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IP8_017 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1667

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8IP8|1|aa|C|1219
8IP8|1|aa|C|1220
8IP8|1|aa|A|1221
8IP8|1|aa|G|1222
8IP8|1|aa|A|1223
8IP8|1|aa|C|1224
*
8IP8|1|aa|G|1267
8IP8|1|aa|G|1268
8IP8|1|aa|G|1269
8IP8|1|aa|U|1270
8IP8|1|aa|G|1271
*
8IP8|1|aa|U|1448
8IP8|1|aa|U|1449
8IP8|1|aa|A|1450
8IP8|1|aa|G|1451
8IP8|1|aa|A|1452
8IP8|1|aa|U|1453
8IP8|1|aa|G|1454

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bl

eukaryotic release factor 1

Chain da

40S ribosomal protein eS10