J3_8IP8_020
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8IP8|1|aa|U|1479
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_020 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1296
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8IP8|1|aa|C|1476
8IP8|1|aa|A|1477
8IP8|1|aa|C|1478
8IP8|1|aa|U|1479
8IP8|1|aa|G|1480
*
8IP8|1|aa|C|1541
8IP8|1|aa|G|1542
8IP8|1|aa|U|1543
8IP8|1|aa|G|1544
8IP8|1|aa|A|1545
8IP8|1|aa|U|1546
8IP8|1|aa|G|1547
8IP8|1|aa|G|1548
*
8IP8|1|aa|C|1579
8IP8|1|aa|G|1580
8IP8|1|aa|A|1581
8IP8|1|aa|G|1582
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ka
- 40S ribosomal protein uS7
- Chain oa
- 40S ribosomal protein uS13
- Chain ra
- 40S ribosomal protein eS19
- Chain ta
- 40S ribosomal protein eS25
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