J3_8IP8_022
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAG*CGCCUGGGAG*CGUCCG
- Length
- 21 nucleotides
- Bulged bases
- 8IP8|1|RB|G|208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP8_022 not in the Motif Atlas
- Homologous match to J3_8P9A_044
- Geometric discrepancy: 0.1326
- The information below is about J3_8P9A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97456.1
- Basepair signature
- cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8IP8|1|RB|C|183
8IP8|1|RB|C|184
8IP8|1|RB|A|185
8IP8|1|RB|A|186
8IP8|1|RB|G|187
*
8IP8|1|RB|C|203
8IP8|1|RB|G|204
8IP8|1|RB|C|205
8IP8|1|RB|C|206
8IP8|1|RB|U|207
8IP8|1|RB|G|208
8IP8|1|RB|G|209
8IP8|1|RB|G|210
8IP8|1|RB|A|211
8IP8|1|RB|G|212
*
8IP8|1|RB|C|224
8IP8|1|RB|G|225
8IP8|1|RB|U|226
8IP8|1|RB|C|227
8IP8|1|RB|C|228
8IP8|1|RB|G|229
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain PA
- 60S ribosomal protein uL24
- Chain SB
- 5.8S ribosomal RNA; 5.8S rRNA
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