J3_8IP9_003

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGACUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8IP9_003 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.0943

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8IP9|1|aa|C|1166
8IP9|1|aa|C|1167
8IP9|1|aa|A|1168
8IP9|1|aa|G|1169
*
8IP9|1|aa|C|1589
8IP9|1|aa|U|1590
8IP9|1|aa|A|1591
8IP9|1|aa|G|1592
8IP9|1|aa|U|1593
8IP9|1|aa|A|1594
8IP9|1|aa|A|1595
*
8IP9|1|aa|U|1617
8IP9|1|aa|G|1618
8IP9|1|aa|A|1619
8IP9|1|aa|C|1620
8IP9|1|aa|U|1621
8IP9|1|aa|A|1622
8IP9|1|aa|C|1623
8IP9|1|aa|G|1624

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ka

40S ribosomal protein uS7

Chain la

40S ribosomal protein uS9

Chain ua

40S ribosomal protein eS28