J3_8IP9_006
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8IP9|1|aa|A|1221, 8IP9|1|aa|G|1451, 8IP9|1|aa|U|1453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8IP9_006 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1077
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8IP9|1|aa|C|1219
8IP9|1|aa|C|1220
8IP9|1|aa|A|1221
8IP9|1|aa|G|1222
8IP9|1|aa|A|1223
8IP9|1|aa|C|1224
*
8IP9|1|aa|G|1267
8IP9|1|aa|G|1268
8IP9|1|aa|G|1269
8IP9|1|aa|U|1270
8IP9|1|aa|G|1271
*
8IP9|1|aa|U|1448
8IP9|1|aa|U|1449
8IP9|1|aa|A|1450
8IP9|1|aa|G|1451
8IP9|1|aa|A|1452
8IP9|1|aa|U|1453
8IP9|1|aa|G|1454
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain da
- 40S ribosomal protein eS10
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