J3_8JSG_002

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8JSG|1|g|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JSG_002 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1915

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8JSG|1|g|C|826
8JSG|1|g|U|827
8JSG|1|g|U|828
8JSG|1|g|G|829
*
8JSG|1|g|C|857
8JSG|1|g|G|858
8JSG|1|g|G|859
8JSG|1|g|A|860
8JSG|1|g|G|861
*
8JSG|1|g|C|868
8JSG|1|g|G|869
8JSG|1|g|U|870
8JSG|1|g|U|871
8JSG|1|g|A|872
8JSG|1|g|A|873
8JSG|1|g|G|874

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 2

Small ribosomal subunit protein bS21

Chain j

Small ribosomal subunit protein uS2

Chain p

Small ribosomal subunit protein uS8