J3_8JSG_008

3D structure

PDB id

8JSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8JSG|1|g|U|1240, 8JSG|1|g|G|1297

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8JSG_008 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.4944

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8JSG|1|g|C|1237
8JSG|1|g|A|1238
8JSG|1|g|A|1239
8JSG|1|g|U|1240
8JSG|1|g|G|1241
*
8JSG|1|g|C|1296
8JSG|1|g|G|1297
8JSG|1|g|U|1298
8JSG|1|g|A|1299
8JSG|1|g|G|1300
8JSG|1|g|U|1301
8JSG|1|g|C|1302
8JSG|1|g|C|1303
*
8JSG|1|g|G|1334
8JSG|1|g|U|1335
8JSG|1|g|C|1336
8JSG|1|g|G|1337

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS7

Chain s

Small ribosomal subunit protein uS13