J3_8JSG_010
3D structure
- PDB id
- 8JSG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 30S-IF3 complex from Escherichia coli
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8JSG|1|g|C|48, 8JSG|1|g|A|50, 8JSG|1|g|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JSG_010 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.2064
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JSG|1|g|G|46
8JSG|1|g|C|47
8JSG|1|g|C|48
8JSG|1|g|U|49
8JSG|1|g|A|50
8JSG|1|g|A|51
8JSG|1|g|C|52
*
8JSG|1|g|G|359
8JSG|1|g|G|360
8JSG|1|g|G|361
8JSG|1|g|G|362
8JSG|1|g|A|363
8JSG|1|g|A|364
8JSG|1|g|U|365
8JSG|1|g|A|366
8JSG|1|g|U|367
*
8JSG|1|g|A|393
8JSG|1|g|G|394
8JSG|1|g|C|395
Current chains
- Chain g
- 16S ribosomal RNA
Nearby chains
- Chain t
- Small ribosomal subunit protein uS12
- Chain y
- 30S ribosomal protein S16
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