J3_8K2D_002
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|A|817, 8K2D|1|C1|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0767
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8K2D|1|C1|U|814
8K2D|1|C1|G|815
8K2D|1|C1|A|816
8K2D|1|C1|A|817
8K2D|1|C1|C|818
8K2D|1|C1|U|819
8K2D|1|C1|A|820
*
8K2D|1|C1|U|905
8K2D|1|C1|A|906
8K2D|1|C1|G|907
*
8K2D|1|C1|C|923
8K2D|1|C1|G|924
8K2D|1|C1|A|925
8K2D|1|C1|A|926
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Ll
- Large ribosomal subunit protein eL39
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