J3_8K2D_005

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8K2D|1|C1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2D_005 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1023

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8K2D|1|C1|U|1479
8K2D|1|C1|G|1480
8K2D|1|C1|A|1481
8K2D|1|C1|A|1482
8K2D|1|C1|G|1483
8K2D|1|C1|U|1484
8K2D|1|C1|G|1485
*
8K2D|1|C1|C|1857
8K2D|1|C1|A|1858
8K2D|1|C1|A|1859
*
8K2D|1|C1|U|1871
8K2D|1|C1|C|1872
8K2D|1|C1|U|1873
8K2D|1|C1|A|1874

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain Lg

Large ribosomal subunit protein eL34A