J3_8K2D_010
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|A|2887, 8K2D|1|C1|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_010 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0613
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|U|2886
8K2D|1|C1|A|2887
8K2D|1|C1|U|2888
8K2D|1|C1|C|2889
*
8K2D|1|C1|G|2914
8K2D|1|C1|U|2915
8K2D|1|C1|U|2916
*
8K2D|1|C1|A|2930
8K2D|1|C1|C|2931
8K2D|1|C1|U|2932
8K2D|1|C1|A|2933
8K2D|1|C1|A|2934
8K2D|1|C1|U|2935
8K2D|1|C1|A|2936
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LV
- Large ribosomal subunit protein uL14A
Coloring options: