J3_8K2D_018
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8K2D|1|C2|G|1445, 8K2D|1|C2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_018 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1703
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C2|C|1215
8K2D|1|C2|C|1216
8K2D|1|C2|A|1217
8K2D|1|C2|G|1218
8K2D|1|C2|A|1219
8K2D|1|C2|C|1220
*
8K2D|1|C2|G|1263
8K2D|1|C2|G|1264
8K2D|1|C2|G|1265
8K2D|1|C2|U|1266
8K2D|1|C2|G|1267
*
8K2D|1|C2|U|1442
8K2D|1|C2|U|1443
8K2D|1|C2|A|1444
8K2D|1|C2|G|1445
8K2D|1|C2|A|1446
8K2D|1|C2|C|1447
8K2D|1|C2|G|1448
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain CD
- Elongation factor 2
- Chain SK
- Small ribosomal subunit protein eS10A
- Chain Sd
- Small ribosomal subunit protein uS14A
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