J3_8K2D_028
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8K2D|1|C1|A|1065, 8K2D|1|C1|A|1093, 8K2D|1|C1|U|1094, 8K2D|1|C1|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_028 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.559
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K2D|1|C1|U|986
8K2D|1|C1|U|987
*
8K2D|1|C1|A|1062
8K2D|1|C1|G|1063
8K2D|1|C1|A|1064
8K2D|1|C1|A|1065
8K2D|1|C1|G|1066
*
8K2D|1|C1|C|1092
8K2D|1|C1|A|1093
8K2D|1|C1|U|1094
8K2D|1|C1|U|1095
8K2D|1|C1|U|1096
8K2D|1|C1|G|1097
8K2D|1|C1|A|1098
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain Lb
- Large ribosomal subunit protein eL29
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