J3_8K2D_031

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2D_031 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1811

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8K2D|1|C1|C|1631
8K2D|1|C1|A|1632
*
8K2D|1|C1|U|1641
8K2D|1|C1|A|1642
8K2D|1|C1|A|1643
8K2D|1|C1|C|1644
8K2D|1|C1|U|1645
*
8K2D|1|C1|A|1810
8K2D|1|C1|G|1811

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27A

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lk

Large ribosomal subunit protein eL38