J3_8K2D_043
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8K2D|1|C4|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8K2D_043 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.0904
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8K2D|1|C4|C|9
8K2D|1|C4|C|10
8K2D|1|C4|A|11
8K2D|1|C4|U|12
8K2D|1|C4|A|13
8K2D|1|C4|U|14
*
8K2D|1|C4|A|66
8K2D|1|C4|G|67
*
8K2D|1|C4|U|111
8K2D|1|C4|G|112
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LT
- Large ribosomal subunit protein eL21A
Coloring options: