J3_8OI5_034

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GAGGACUGCG*CUAGGA

Length

18 nucleotides

Bulged bases

8OI5|1|AS|U|605

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8OI5_034 not in the Motif Atlas

Homologous match to J3_8C3A_050

Geometric discrepancy: 0.0523

The information below is about J3_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_15033.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8OI5|1|AS|U|497
8OI5|1|AS|C|498
*
8OI5|1|AS|G|586
8OI5|1|AS|A|587
8OI5|1|AS|G|588
8OI5|1|AS|G|589
8OI5|1|AS|A|590
8OI5|1|AS|C|591
8OI5|1|AS|U|592
8OI5|1|AS|G|593
8OI5|1|AS|C|594
8OI5|1|AS|G|595
*
8OI5|1|AS|C|604
8OI5|1|AS|U|605
8OI5|1|AS|A|606
8OI5|1|AS|G|607
8OI5|1|AS|G|608
8OI5|1|AS|A|609

Current chains

Chain AS

25S

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BA

60S ribosomal protein L6

Chain BB

60S ribosomal protein L7-A

Chain BZ

60S ribosomal protein L32